Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Others

Cell type

Head and Neck Neoplasms

MeSH Description

Soft tissue tumors or cancer arising from the mucosal surfaces of the LIP; oral cavity; PHARYNX; LARYNX; and cervical esophagus. Other sites included are the NOSE and PARANASAL SINUSES; SALIVARY GLANDS; THYROID GLAND and PARATHYROID GLANDS; and MELANOMA and non-melanoma skin cancers of the head and neck. (from Holland et al., Cancer Medicine, 4th ed, p1651)

Sample

source_name

HN120 cis-platin resistant primary HNSCC

cell type

Primary Cisplatin Resistant (PCR) cells

passages

13-15

source

Cisplatin-reistant model

chip antibody

H3K4me3 (04-745, Millipore)

Sequenced DNA Library

library_name

ERROR: cannot retrieve data from NCBI: too many requests

library_strategy

ERROR: cannot retrieve data from NCBI: too many requests

library_source

ERROR: cannot retrieve data from NCBI: too many requests

library_selection

ERROR: cannot retrieve data from NCBI: too many requests

library_construction_protocol

ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model

ERROR: cannot retrieve data from NCBI: too many requests

cycle_sequence

ERROR: cannot retrieve data from NCBI: too many requests

cycle_count

ERROR: cannot retrieve data from NCBI: too many requests

flow_sequence

ERROR: cannot retrieve data from NCBI: too many requests

flow_count

ERROR: cannot retrieve data from NCBI: too many requests

key_sequence

ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads

27277436

Reads aligned (%)

97.2

Duplicates removed (%)

8.1

Number of peaks

1017 (qval < 1E-05)

hg19

Number of total reads

27277436

Reads aligned (%)

96.4

Duplicates removed (%)

9.6

Number of peaks

820 (qval < 1E-05)