Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SNAI2

Cell type

Cell type Class
Epidermis
Cell type
Keratinocytes
MeSH Description
Epidermal cells which synthesize keratin and undergo characteristic changes as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell.

Attributes by original data submitter

Sample

source_name
keratinocytes_overexpressing LACZ_differentiation medium_SNAI2-ChIPseq
cell type
Human keratinocytes
genotype/variation
overexpressing LACZ
culture medium
differentiation medium
chip antibody
anti-SNAI2 (Slug (C19G7)) Rabbit mAb
chip antibody vendor
Cell Signaling

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
30755738
Reads aligned (%)
60.1
Duplicates removed (%)
35.8
Number of peaks
1993 (qval < 1E-05)

hg38

Number of total reads
30755738
Reads aligned (%)
61.3
Duplicates removed (%)
34.9
Number of peaks
2078 (qval < 1E-05)

Base call quality data from DBCLS SRA