Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
REST

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
chip-antibody
mouse monoclonal NRSF, custom generated (Johnson et al. 2007, PMID: 17540862)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed using 1% formaldehyde or 1% formaldehyde at 37C Libraries were generated following Illumina's DNA Sample Prep Kit protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
15750150
Reads aligned (%)
84.7
Duplicates removed (%)
10.9
Number of peaks
3042 (qval < 1E-05)

hg38

Number of total reads
15750150
Reads aligned (%)
86.4
Duplicates removed (%)
9.8
Number of peaks
2762 (qval < 1E-05)

Base call quality data from DBCLS SRA