Antigen

Antigen Class

TFs and others

Antigen

GABPA

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

chip-antibody

mouse monoclonal GABP, Santa Cruz sc-28312

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Cells were fixed using 1% formaldehyde or 1% formaldehyde at 37C Libraries were generated following Illumina's DNA Sample Prep Kit protocol

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

15099784

Reads aligned (%)

80.0

Duplicates removed (%)

25.2

Number of peaks

5504 (qval < 1E-05)

hg19

Number of total reads

15099784

Reads aligned (%)

78.8

Duplicates removed (%)

25.8

Number of peaks

5725 (qval < 1E-05)