Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GABPA

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
chip-antibody
mouse monoclonal GABP, Santa Cruz sc-28312

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed using 1% formaldehyde or 1% formaldehyde at 37C Libraries were generated following Illumina's DNA Sample Prep Kit protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
22959264
Reads aligned (%)
77.1
Duplicates removed (%)
14.8
Number of peaks
7016 (qval < 1E-05)

hg38

Number of total reads
22959264
Reads aligned (%)
78.6
Duplicates removed (%)
13.8
Number of peaks
6921 (qval < 1E-05)

Base call quality data from DBCLS SRA