Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
Input
chip antibody
none
cell line
S2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Purified ChIP-DNA was prepared for sequencing on a HiSeq 2000 sequencer using Illumina standard protocol. TruSeq ChIP Sample Preparation Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm6

Number of total reads
42835006
Reads aligned (%)
94.5
Duplicates removed (%)
47.2
Number of peaks
10568 (qval < 1E-05)

dm3

Number of total reads
42835006
Reads aligned (%)
94.9
Duplicates removed (%)
45.6
Number of peaks
8682 (qval < 1E-05)

Base call quality data from DBCLS SRA