Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Pc

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
PC 1
chip antibody
Polycomb
cell line
S2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Purified ChIP-DNA was prepared for sequencing on a HiSeq 2000 sequencer using Illumina standard protocol. TruSeq ChIP Sample Preparation Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
51479548
Reads aligned (%)
94.6
Duplicates removed (%)
56.1
Number of peaks
10579 (qval < 1E-05)

dm6

Number of total reads
51479548
Reads aligned (%)
94.2
Duplicates removed (%)
58.1
Number of peaks
9463 (qval < 1E-05)

Base call quality data from DBCLS SRA