Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
velo

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
Velo 2
chip antibody
Velo
cell line
S2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Purified ChIP-DNA was prepared for sequencing on a HiSeq 2000 sequencer using Illumina standard protocol. TruSeq ChIP Sample Preparation Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
52762900
Reads aligned (%)
73.2
Duplicates removed (%)
60.4
Number of peaks
6586 (qval < 1E-05)

dm6

Number of total reads
52762900
Reads aligned (%)
72.1
Duplicates removed (%)
63.9
Number of peaks
5095 (qval < 1E-05)

Base call quality data from DBCLS SRA