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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: velo
wikigenes
PDBj
CellType: S2
ATCC
MeSH
RIKEN BRC
SRX475422
GSM1333825: ChIP-Seq Analysis of Velo in S2 cells, first replicate; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
velo
Cell type
Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage
Attributes by original data submitter
Sample
source_name
Velo 1
chip antibody
Velo
cell line
S2
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Purified ChIP-DNA was prepared for sequencing on a HiSeq 2000 sequencer using Illumina standard protocol. TruSeq ChIP Sample Preparation Kit
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
48500916
Reads aligned (%)
61.8
Duplicates removed (%)
72.8
Number of peaks
5936 (qval < 1E-05)
dm3
Number of total reads
48500916
Reads aligned (%)
62.8
Duplicates removed (%)
70.1
Number of peaks
7367 (qval < 1E-05)
Base call quality data from
DBCLS SRA