SRX474610
GSM1332723: inp H3K4me3 mixed 2; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
5-13h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
input_H3K4me3_mixed
tissue
embryo
age
5-13h
tissue subtype
whole embryo

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were digested with MNase, solubilized and ChIP performed using the appropriate antibody. Libraries were prepared as described in Bowman et al., 2013.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
14568344
Reads aligned (%)
93.4
Duplicates removed (%)
10.8
Number of peaks
1241 (qval < 1E-05)

dm3

Number of total reads
14568344
Reads aligned (%)
93.9
Duplicates removed (%)
8.5
Number of peaks
1040 (qval < 1E-05)

Base call quality data from DBCLS SRA