Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Parasegment 6
NA
NA

Attributes by original data submitter

Sample

source_name
input_H3K27me3_PS6
tissue
embryo
age
4-10h
tissue subtype
parasegment 6

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were digested with MNase, solubilized and ChIP performed using the appropriate antibody. Libraries were prepared as described in Bowman et al., 2013.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm6

Number of total reads
15457354
Reads aligned (%)
95.1
Duplicates removed (%)
15.5
Number of peaks
1060 (qval < 1E-05)

dm3

Number of total reads
15457354
Reads aligned (%)
95.7
Duplicates removed (%)
13.6
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA