Curated Sample Data


Genome
dm3
Antigen Class
Histone
Antigen
H3K4me3
Cell type Class
Embryo
Cell type
Parasegment 7

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
H3K4me3_PS7
tissue
embryo
age
5-13h
tissue subtype
parasegment 7
chip antibody
anti-K4me3
chip antibody vendor
Millipore

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were digested with MNase, solubilized and ChIP performed using the appropriate antibody. Libraries were prepared as described in Bowman et al., 2013.

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
11235801
Reads aligned (%)
52.8
Duplicates removed (%)
27.3
Number of peaks
2207 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA