Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Cardiovascular
Cell type
EA.hy926
Tissue
Somatic Cell Hybrid
Cell Type
Endothelial

Attributes by original data submitter

Sample

source_name
EA.Hy926
cell line
EA.Hy926
cell type
Human umbilical vein endothelial cell line
chip antibody
H3K27ac (Abcam, ab4729)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. The purified DNA fragments were blunt-ended, ligated to the Solexa paired-end adaptors by using NEBNext Ultra II DNA Library Prep kit and NEBNext Multiplex Oligos kit (NEB, USA) to build the libraries and tested by Agilent 2200.

Sequencing Platform

instrument_model
HiSeq X Ten

hg38

Number of total reads
52450603
Reads aligned (%)
98.8
Duplicates removed (%)
8.7
Number of peaks
43624 (qval < 1E-05)

hg19

Number of total reads
52450603
Reads aligned (%)
98.0
Duplicates removed (%)
9.0
Number of peaks
41772 (qval < 1E-05)

Base call quality data from DBCLS SRA