Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BAP1

Cell type

Cell type Class
Pancreas
Cell type
HPDE6
Primary Tissue
Pancreas
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
pancreas
cell line
HPDE
cell type
human pancreatic duct epithelial (HPDE) cells
treatment
none
chip antibody
BAP1 (D1W9B) (ChIP), Cell Signaling Technology, Cat# 78105
input used for data normalization
Input#1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with the indicated antibodies. Libraries were prepared according to NEBNext® Ultra™ II DNA Library Prep Kit for Illumina and libraries were sequenced on the HiSeq4000 platform.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
39878669
Reads aligned (%)
52.8
Duplicates removed (%)
23.2
Number of peaks
720 (qval < 1E-05)

hg38

Number of total reads
39878669
Reads aligned (%)
54.1
Duplicates removed (%)
22.3
Number of peaks
1161 (qval < 1E-05)

Base call quality data from DBCLS SRA