Antigen

Antigen Class

TFs and others

Antigen

BAP1

Cell type

Cell type Class

Pancreas

Cell type

HPDE6

Primary Tissue

Pancreas

Tissue Diagnosis

Normal

Sample

source_name

pancreas

cell line

HPDE

cell type

human pancreatic duct epithelial (HPDE) cells

treatment

none

chip antibody

BAP1 (D1W9B) (ChIP), Cell Signaling Technology, Cat# 78105

input used for data normalization

Input#1

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with the indicated antibodies. Libraries were prepared according to NEBNext® Ultra™ II DNA Library Prep Kit for Illumina and libraries were sequenced on the HiSeq4000 platform.

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

39878669

Reads aligned (%)

69.6

Duplicates removed (%)

22.3

Number of peaks

1161 (qval < 1E-05)

hg19

Number of total reads

39878669

Reads aligned (%)

68.8

Duplicates removed (%)

23.2

Number of peaks

720 (qval < 1E-05)