Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Cervical cancer
chip antibody
H3K4me3 (39915, Active Motif)
treatment
1H of 1% O2
cell line
HeLa

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
see SINHCAF/FAM60A and SIN3A specifically repress HIF-2α expression, Biddlestone J et al 2018. PMID: 29784889 DNA libraries for ChIP sequening were prepared using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
17162275
Reads aligned (%)
95.4
Duplicates removed (%)
36.3
Number of peaks
6493 (qval < 1E-05)

hg19

Number of total reads
17162275
Reads aligned (%)
94.4
Duplicates removed (%)
37.8
Number of peaks
6445 (qval < 1E-05)

Base call quality data from DBCLS SRA