SRX4720601
GSM3396514: Input – ATACseq and H3K4me3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
HapES cells (AN3-12)
antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Illumina NEBNext kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
61572525
Reads aligned (%)
97.6
Duplicates removed (%)
22.8
Number of peaks
592 (qval < 1E-05)

mm9

Number of total reads
61572525
Reads aligned (%)
97.3
Duplicates removed (%)
22.8
Number of peaks
663 (qval < 1E-05)

Base call quality data from DBCLS SRA