Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GTF3C2

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90
cell line
IMR90
media
EMEM with 10% FBS
serum
non-serum starved
chip-antibody
in house anti-GTF3C2 rabbit polyclonal

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
20666577
Reads aligned (%)
84.7
Duplicates removed (%)
55.2
Number of peaks
776 (qval < 1E-05)

hg19

Number of total reads
20666577
Reads aligned (%)
83.9
Duplicates removed (%)
56.6
Number of peaks
805 (qval < 1E-05)

Base call quality data from DBCLS SRA