Curated Sample Data


Genome
hg19
Antigen Class
TFs and others
Antigen
AGO1
Cell type Class
Blood
Cell type
K-562

Cell type information


Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by Original Data Submitter


source_name
K562
biomaterial_provider
ATCC (CCL-243)
cell line
K562
cell type
Hepatocellular carcinoma
chip antibody
AGO1 (Cell Signaling Technology Cat# 5053)

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were isolated and sonicated and lysates were cleared-up and applied for purification of RBP-DNA complexes with antibodies. Libraries were constructed according to the instruction of the Illumina Preparing Samples for ChIP Sequencing.

Platform Information


instrument_model
Illumina HiSeq 2500

External Database Query

Logs in read processing pipeline


Number of total reads
67463558
Reads aligned (%)
67.4
Duplicates removed (%)
35.7
Number of peaks
7295 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA