Curated Sample Data


Genome
hg19
Antigen Class
TFs and others
Antigen
AGO1
Cell type Class
Liver
Cell type
Hep G2

Cell type information


Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by Original Data Submitter


source_name
HepG2
biomaterial_provider
ATCC (HB-8065)
cell line
HepG2
cell type
Hepatocellular carcinoma
chip antibody
AGO1 (Cell Signaling Technology Cat# 5053)

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were isolated and sonicated and lysates were cleared-up and applied for purification of RBP-DNA complexes with antibodies. Libraries were constructed according to the instruction of the Illumina Preparing Samples for ChIP Sequencing.

Platform Information


instrument_model
Illumina HiSeq 2500

External Database Query

Logs in read processing pipeline


Number of total reads
123468603
Reads aligned (%)
65.7
Duplicates removed (%)
59.2
Number of peaks
12507 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA