Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived mesodermal cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES cell derived Mesoendoderm Cells
mouse strain of origin
(C3H/HeH x 101/H)F1
cell line
D3
antibody
pre-immune IgG

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody Libraries were prepared using illumina ChIP-seq sample preparation kit

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
33185812
Reads aligned (%)
90.7
Duplicates removed (%)
29.2
Number of peaks
736 (qval < 1E-05)

mm9

Number of total reads
33185812
Reads aligned (%)
90.4
Duplicates removed (%)
29.1
Number of peaks
828 (qval < 1E-05)

Base call quality data from DBCLS SRA