SRX4679529
GSM3389352: ATRX in-frame fusion neuroblastoma. Patient SJNBL047443 Input XL; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
Tumor
NA
NA

Attributes by original data submitter

Sample

source_name
Tumor Tissue
tissue
ATRX in-frame fusion neuroblastoma (patient SJNBL047443)
treatment
none (untreated)
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Tissue was homogenized at 17000 rpm for 30 seconds with a tissue homogenizer (Polytron, PT10-35GT). XL-ChIP. Libaries were prepared at Active Motif.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35461133
Reads aligned (%)
97.9
Duplicates removed (%)
0.5
Number of peaks
797 (qval < 1E-05)

hg19

Number of total reads
35461133
Reads aligned (%)
97.1
Duplicates removed (%)
0.6
Number of peaks
986 (qval < 1E-05)

Base call quality data from DBCLS SRA