Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
REST

Cell type

Cell type Class
Neural
Cell type
CHLA-90
NA
NA

Attributes by original data submitter

Sample

source_name
Cell Culture
tissue
CHLA90 ATRX in-frame fusion metastatic neuroblastoma
treatment
none (untreated)
chip antibody
REST (Millipore, 07-579)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
XL ChIP as previously described (Fontanals-Cirera et al., 2017). Library prepared as previously described (Fontanals-Cirera et al., 2017).

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
49373643
Reads aligned (%)
56.8
Duplicates removed (%)
34.9
Number of peaks
3079 (qval < 1E-05)

hg38

Number of total reads
49373643
Reads aligned (%)
58.9
Duplicates removed (%)
33.1
Number of peaks
3334 (qval < 1E-05)

Base call quality data from DBCLS SRA