Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATRX

Cell type

Cell type Class
Neural
Cell type
CHLA-90
NA
NA

Attributes by original data submitter

Sample

source_name
Cell Culture
tissue
CHLA90 ATRX in-frame fusion metastatic neuroblastoma
treatment
none (untreated)
chip antibody
ATRX (Abcam, ab97508)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
XL ChIP as previously described (Fontanals-Cirera et al., 2017). Library prepared as previously described (Fontanals-Cirera et al., 2017).

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
81232060
Reads aligned (%)
76.9
Duplicates removed (%)
14.8
Number of peaks
16741 (qval < 1E-05)

hg38

Number of total reads
81232060
Reads aligned (%)
79.6
Duplicates removed (%)
12.7
Number of peaks
12205 (qval < 1E-05)

Base call quality data from DBCLS SRA