Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
CHLA-90
NA
NA

Attributes by original data submitter

Sample

source_name
Cell Culture
tissue
CHLA90 ATRX in-frame fusion metastatic neuroblastoma
treatment
none (untreated)
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
XL ChIP as previously described (Fontanals-Cirera et al., 2017). Library prepared as previously described (Fontanals-Cirera et al., 2017).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
45006217
Reads aligned (%)
99.9
Duplicates removed (%)
0.9
Number of peaks
149 (qval < 1E-05)

hg19

Number of total reads
45006217
Reads aligned (%)
99.9
Duplicates removed (%)
0.9
Number of peaks
327 (qval < 1E-05)

Base call quality data from DBCLS SRA