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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: REST
wikigenes
PDBj
CellType: SK-N-MM
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX4679525
GSM3389348: SKNMM ATRX in-frame fusion metastatic neuroblastoma ChIP-seq REST; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
REST
Cell type
Cell type Class
Neural
Cell type
SK-N-MM
NA
NA
Attributes by original data submitter
Sample
source_name
Cell Culture
tissue
SKNMM ATRX in-frame fusion metastatic neuroblastoma
treatment
none (untreated)
chip antibody
REST (Millipore, 07-579)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
XL ChIP as previously described (Fontanals-Cirera et al., 2017). Library prepared as previously described (Fontanals-Cirera et al., 2017).
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
43264848
Reads aligned (%)
73.5
Duplicates removed (%)
19.7
Number of peaks
2029 (qval < 1E-05)
hg38
Number of total reads
43264848
Reads aligned (%)
76.0
Duplicates removed (%)
17.7
Number of peaks
2409 (qval < 1E-05)
Base call quality data from
DBCLS SRA