SRX4679525
GSM3389348: SKNMM ATRX in-frame fusion metastatic neuroblastoma ChIP-seq REST; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
REST

Cell type

Cell type Class
Neural
Cell type
SK-N-MM
NA
NA

Attributes by original data submitter

Sample

source_name
Cell Culture
tissue
SKNMM ATRX in-frame fusion metastatic neuroblastoma
treatment
none (untreated)
chip antibody
REST (Millipore, 07-579)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
XL ChIP as previously described (Fontanals-Cirera et al., 2017). Library prepared as previously described (Fontanals-Cirera et al., 2017).

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
43264848
Reads aligned (%)
73.5
Duplicates removed (%)
19.7
Number of peaks
2029 (qval < 1E-05)

hg38

Number of total reads
43264848
Reads aligned (%)
76.0
Duplicates removed (%)
17.7
Number of peaks
2409 (qval < 1E-05)

Base call quality data from DBCLS SRA