SRX4679524
GSM3389347: SKNMM ATRX in-frame fusion metastatic neuroblastoma ChIP-seq ATRX; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATRX

Cell type

Cell type Class
Neural
Cell type
SK-N-MM
NA
NA

Attributes by original data submitter

Sample

source_name
Cell Culture
tissue
SKNMM ATRX in-frame fusion metastatic neuroblastoma
treatment
none (untreated)
chip antibody
ATRX (Abcam, ab97508)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
XL ChIP as previously described (Fontanals-Cirera et al., 2017). Library prepared as previously described (Fontanals-Cirera et al., 2017).

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
87301297
Reads aligned (%)
96.3
Duplicates removed (%)
15.8
Number of peaks
18930 (qval < 1E-05)

hg19

Number of total reads
87301297
Reads aligned (%)
95.4
Duplicates removed (%)
18.0
Number of peaks
22306 (qval < 1E-05)

Base call quality data from DBCLS SRA