SRX4679522
GSM3389345: SKNFI ATRX wild-type metastatic neuroblastoma ChIP-seq ATRX; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATRX

Cell type

Cell type Class
Neural
Cell type
SK-N-FI
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
Cell Culture
tissue
SKNFI ATRX wild-type metastatic neuroblastoma
treatment
none (untreated)
chip antibody
ATRX (Abcam, ab97508)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
XL ChIP as previously described (Fontanals-Cirera et al., 2017). Library prepared as previously described (Fontanals-Cirera et al., 2017).

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
85289928
Reads aligned (%)
91.9
Duplicates removed (%)
17.4
Number of peaks
10458 (qval < 1E-05)

hg19

Number of total reads
85289928
Reads aligned (%)
89.0
Duplicates removed (%)
25.2
Number of peaks
5481 (qval < 1E-05)

Base call quality data from DBCLS SRA