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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATRX
wikigenes
PDBj
CellType: SK-N-FI
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX4679522
GSM3389345: SKNFI ATRX wild-type metastatic neuroblastoma ChIP-seq ATRX; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ATRX
Cell type
Cell type Class
Neural
Cell type
SK-N-FI
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma
Attributes by original data submitter
Sample
source_name
Cell Culture
tissue
SKNFI ATRX wild-type metastatic neuroblastoma
treatment
none (untreated)
chip antibody
ATRX (Abcam, ab97508)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
XL ChIP as previously described (Fontanals-Cirera et al., 2017). Library prepared as previously described (Fontanals-Cirera et al., 2017).
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
85289928
Reads aligned (%)
91.9
Duplicates removed (%)
17.4
Number of peaks
10458 (qval < 1E-05)
hg19
Number of total reads
85289928
Reads aligned (%)
89.0
Duplicates removed (%)
25.2
Number of peaks
5481 (qval < 1E-05)
Base call quality data from
DBCLS SRA