Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA2

Cell type

Cell type Class
Pancreas
Cell type
CFPAC-1
Primary Tissue
Pancreas
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
CFPAC1.WT.ChIP.FOXA2
cell line
CFPAC1 clonal cell line
cell type
Pancreatic Ductal Adenocarcinoma (PDAC) cell line
antibody
Anti-FOXA2 (Antibody sc-6554 Lot. A0715)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
61263797
Reads aligned (%)
97.4
Duplicates removed (%)
24.8
Number of peaks
71856 (qval < 1E-05)

hg19

Number of total reads
61263797
Reads aligned (%)
97.0
Duplicates removed (%)
25.7
Number of peaks
71652 (qval < 1E-05)

Base call quality data from DBCLS SRA