Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Liver

Cell type

Carcinoma, Hepatocellular

MeSH Description

A primary malignant neoplasm of epithelial liver cells. It ranges from a well-differentiated tumor with EPITHELIAL CELLS indistinguishable from normal HEPATOCYTES to a poorly differentiated neoplasm. The cells may be uniform or markedly pleomorphic, or form GIANT CELLS. Several classification schemes have been suggested.

Sample

source_name

HCC cell line

antibody

none

cell type

hepatocellular carcinoma

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Cells were crosslinked and chromatin immunoprecipitation was performed with a V5 antibody; the control is the isolated DNA without the IP performed libarary constructed following Illumina Sample Prep guide.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

62700696

Reads aligned (%)

94.7

Duplicates removed (%)

12.4

Number of peaks

831 (qval < 1E-05)

mm9

Number of total reads

62700696

Reads aligned (%)

94.6

Duplicates removed (%)

12.3

Number of peaks

920 (qval < 1E-05)