Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
ChIP-seq
agent
DMSO
chip antibody
none
cell line
293 CFIm25 KO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared using Illumina's TruSeq ChIP library Preparation Kit according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
44667659
Reads aligned (%)
96.3
Duplicates removed (%)
10.9
Number of peaks
8324 (qval < 1E-05)

hg19

Number of total reads
44667659
Reads aligned (%)
95.2
Duplicates removed (%)
11.2
Number of peaks
7778 (qval < 1E-05)

Base call quality data from DBCLS SRA