SRX4664264
GSM3381237: 293 DRB Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
ChIP-seq
agent
DRB
chip antibody
none
cell line
293

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared using Illumina's TruSeq ChIP library Preparation Kit according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36792491
Reads aligned (%)
97.5
Duplicates removed (%)
15.1
Number of peaks
8995 (qval < 1E-05)

hg19

Number of total reads
36792491
Reads aligned (%)
96.8
Duplicates removed (%)
15.2
Number of peaks
8691 (qval < 1E-05)

Base call quality data from DBCLS SRA