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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H2AK119ub
wikigenes
PDBj
CellType: Unclassified
ATCC
MeSH
RIKEN BRC
SRX4650859
GSM3379285: PCGF1/3/5/2fl UNT H2AK119ub1 rep3; Drosophila melanogaster; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H2AK119ub
Cell type
Cell type Class
Unclassified
Cell type
Unclassified
NA
NA
Attributes by original data submitter
Sample
source_name
Mouse embryonic stem cells with Drosophila spike-in, untreated control, H2AK119ub1 ChIP-seq
cell line
Pcgf1/3/5/2fl/fl
replicate
3
treatment agent
none
treatment time point
0 hr
clone
H3
spike-in reference organism
Drosophila melanogaster
spike-in cell line
SG4
ChIP
H2AK119ub1
antibody
Cell Signaling Technology(#D27C4 )
Sequenced DNA Library
library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests
Sequencing Platform
instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
35329600
Reads aligned (%)
1.1
Duplicates removed (%)
2.0
Number of peaks
67 (qval < 1E-05)
dm3
Number of total reads
35329600
Reads aligned (%)
1.5
Duplicates removed (%)
1.6
Number of peaks
124 (qval < 1E-05)
Base call quality data from
DBCLS SRA