Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse embryonic stem cells with Drosophila spike-in, tamoxifen-treated (72hr), gDNA-seq
cell line
Pcgf3fl/fl
replicate
2
treatment agent
tamoxifen (OHT)
treatment time point
72 hr
spike-in reference organism
Drosophila melanogaster
spike-in cell line
SG4
ChIP
none
antibody
none

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

dm6

Number of total reads
17728579
Reads aligned (%)
2.8
Duplicates removed (%)
2.4
Number of peaks
106 (qval < 1E-05)

dm3

Number of total reads
17728579
Reads aligned (%)
3.1
Duplicates removed (%)
1.7
Number of peaks
120 (qval < 1E-05)

Base call quality data from DBCLS SRA