Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Cortex
NA
NA

Attributes by original data submitter

Sample

source_name
P2 Wildtype Cortex_Input DNA
strain
CD1
age
P2
tissue
cortex
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and TBR1-DNA complexes were isolated with antibody. ChIP-seq libraries were generated using Ovation Ultralow System V2 (NuGEN) following manufacturer's protocol. Libraries were sequenced on Illumina HiSeq 4000

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
95571448
Reads aligned (%)
97.8
Duplicates removed (%)
33.5
Number of peaks
689 (qval < 1E-05)

mm9

Number of total reads
95571448
Reads aligned (%)
97.6
Duplicates removed (%)
33.5
Number of peaks
778 (qval < 1E-05)

Base call quality data from DBCLS SRA