SRX4611734
GSM3357161: ER t10 Rep 6 [t10.6]; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7_ER t10
cell line
MCF7
replicate
6
time
t10
control antibody
CTCF Cell signaling D31H2 Lot: 3
target antibody
ER Millipore 06-965 Lot:3008172
factor
ER

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Thruplex

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27199140
Reads aligned (%)
99.3
Duplicates removed (%)
3.3
Number of peaks
61096 (qval < 1E-05)

hg19

Number of total reads
27199140
Reads aligned (%)
98.7
Duplicates removed (%)
4.2
Number of peaks
60736 (qval < 1E-05)

Base call quality data from DBCLS SRA