SRX4611729
GSM3357156: ER t20 Rep 6 [t20.6]; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7_ER t20
cell line
MCF7
replicate
6
time
t20
control antibody
CTCF Cell signaling D31H2 Lot: 3
target antibody
ER Millipore 06-965 Lot:3008172
factor
ER

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Thruplex

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29243647
Reads aligned (%)
99.0
Duplicates removed (%)
5.9
Number of peaks
53064 (qval < 1E-05)

hg19

Number of total reads
29243647
Reads aligned (%)
98.5
Duplicates removed (%)
6.9
Number of peaks
52847 (qval < 1E-05)

Base call quality data from DBCLS SRA