Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LMNA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS derived cardiac cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPSC-CMs
cell type
iPSC-CMs
day post-differentiation
day 40
genotype/variation
LMNA WT/MT
chip antibody
Lamin A/C (Abcam ab8984)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and LMNA-DNA complexes were isolated with antibody. ChIP-seq libraries were prepared for sequencing using The Ion Proton™ System protocols.

Sequencing Platform

instrument_model
NextSeq 550

hg19

Number of total reads
47369372
Reads aligned (%)
147.3
Duplicates removed (%)
14.1
Number of peaks
1463 (qval < 1E-05)

hg38

Number of total reads
47369372
Reads aligned (%)
158.1
Duplicates removed (%)
12.1
Number of peaks
4686 (qval < 1E-05)

Base call quality data from DBCLS SRA