SRX4580659
GSM3348100: 293T Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
293T
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from crosslinked and sonicated nuclei, then protein-DNA complex were isolated with HA beads. Libraries were prepared by KAPA Hyper Prep Kit (KAPABIOSYSTEMS, KK8505)

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
61900861
Reads aligned (%)
66.6
Duplicates removed (%)
16.4
Number of peaks
877 (qval < 1E-05)

hg19

Number of total reads
61900861
Reads aligned (%)
66.0
Duplicates removed (%)
16.7
Number of peaks
367 (qval < 1E-05)

Base call quality data from DBCLS SRA