SRX4574095
GSM3346252: HEK293 control2 input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HEK293 cell line
cell line
HEK293
genotype/variation
control
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Illumina TruSeq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17726082
Reads aligned (%)
96.8
Duplicates removed (%)
1.1
Number of peaks
325 (qval < 1E-05)

hg19

Number of total reads
17726082
Reads aligned (%)
96.2
Duplicates removed (%)
1.2
Number of peaks
316 (qval < 1E-05)

Base call quality data from DBCLS SRA