SRX4557398
GSM3334223: mES Input DNA; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cells
tissue
mouse embryonic stem cells
cell type
E14
strain
129/Ola
genotype
wild type
age
Passage 15
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Unfixed cells were lysed and treated with Micrococcal nuclease. Libraries were prepared using ThruPLEX-FD or ThruPLEX DNA-seq kit (Rubicon Genomics)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
72388654
Reads aligned (%)
94.6
Duplicates removed (%)
79.1
Number of peaks
39564 (qval < 1E-05)

mm9

Number of total reads
72388654
Reads aligned (%)
93.4
Duplicates removed (%)
78.9
Number of peaks
40059 (qval < 1E-05)

Base call quality data from DBCLS SRA