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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Ureteric epithelium
ATCC
MeSH
RIKEN BRC
SRX4557395
GSM3334220: UB Input DNA; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Others
Cell type
Ureteric epithelium
NA
NA
Attributes by original data submitter
Sample
source_name
Ureteric epithelium
tissue
Ureteric epithelium
cell type
Hoxb7-GFP+ ureteric epithelium
strain
(C57BL/6J x CBA/J)F2 origin, maintained with C57BL/6J background
genotype
Hoxb7myr- Venus/+
age
E15.5
chip antibody
none
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Unfixed cells were lysed and treated with Micrococcal nuclease. Libraries were prepared using ThruPLEX-FD or ThruPLEX DNA-seq kit (Rubicon Genomics)
Sequencing Platform
instrument_model
Illumina HiSeq 3000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
51338878
Reads aligned (%)
96.6
Duplicates removed (%)
56.0
Number of peaks
15894 (qval < 1E-05)
mm9
Number of total reads
51338878
Reads aligned (%)
95.7
Duplicates removed (%)
55.8
Number of peaks
15686 (qval < 1E-05)
Base call quality data from
DBCLS SRA