SRX4557392
GSM3334217: MM Input DNA; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
Metanephric mesenchyme
NA
NA

Attributes by original data submitter

Sample

source_name
Metanephric mesenchyme (cap mesenchyme)
tissue
Metanephric mesenchyme (cap mesenchyme)
cell type
Cited1-RFP+ cap mesenchyme
strain
(C57BL/6 x DBA)F1 origin, maintained with C57BL/6J background (N5)
genotype
Cited1nuc-TagRFP-T
age
E18.5
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Unfixed cells were lysed and treated with Micrococcal nuclease. Libraries were prepared using ThruPLEX-FD or ThruPLEX DNA-seq kit (Rubicon Genomics)

Sequencing Platform

instrument_model
Illumina HiSeq 3000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
114512790
Reads aligned (%)
96.5
Duplicates removed (%)
60.0
Number of peaks
3013 (qval < 1E-05)

mm9

Number of total reads
114512790
Reads aligned (%)
95.7
Duplicates removed (%)
59.8
Number of peaks
2893 (qval < 1E-05)

Base call quality data from DBCLS SRA