Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HEK293
kdm inhibitor
DMSO
cell line
HEK293
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Library was constructed using the NEB Ulra II DNA library prep kit

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
26922727
Reads aligned (%)
95.5
Duplicates removed (%)
2.2
Number of peaks
521 (qval < 1E-05)

hg19

Number of total reads
26922727
Reads aligned (%)
94.8
Duplicates removed (%)
2.4
Number of peaks
455 (qval < 1E-05)

Base call quality data from DBCLS SRA