Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Placenta
Cell type
Villous placenta
NA
NA

Attributes by original data submitter

Sample

source_name
villous placenta >39 weeks gestational age
tissue
villous placenta >39 weeks gestational age
chip antibody
H3K4me1 (abcam 8895)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody using the MAGnify ChIP kit (Thermo Fisher) Libraries were prepared using the DNA Smart ChIP-seq library kit (Takara).

Sequencing Platform

instrument_model
Illumina HiSeq 3000

hg38

Number of total reads
25436780
Reads aligned (%)
73.2
Duplicates removed (%)
10.8
Number of peaks
20974 (qval < 1E-05)

hg19

Number of total reads
25436780
Reads aligned (%)
73.0
Duplicates removed (%)
10.9
Number of peaks
20916 (qval < 1E-05)

Base call quality data from DBCLS SRA