Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
No Help input
strain
C57BL/6JRj
tissue
spleen
cell type
memory CD8 T cells
treatment
No CD4 T cell help
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Between 6-9 x 10^4 E7-specific memory CD8+ T cells per sample were subjected to ULI-NChIP procedure ChIP libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
32450863
Reads aligned (%)
98.9
Duplicates removed (%)
14.6
Number of peaks
278 (qval < 1E-05)

mm9

Number of total reads
32450863
Reads aligned (%)
98.7
Duplicates removed (%)
14.5
Number of peaks
277 (qval < 1E-05)

Base call quality data from DBCLS SRA