Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
JIL-1

Cell type

Cell type Class
Larvae
Cell type
Salivary glands
NA
NA

Attributes by original data submitter

Sample

source_name
Salivary Glands
cell type
Salivary Gland Cells
developmental stage
Third instar larvae
strain
Wild Type
chip antibody
JIL-1 monoclonal antibody 5C9

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

dm3

Number of total reads
28481385
Reads aligned (%)
19.9
Duplicates removed (%)
65.8
Number of peaks
4309 (qval < 1E-05)

dm6

Number of total reads
28481385
Reads aligned (%)
19.7
Duplicates removed (%)
66.0
Number of peaks
4293 (qval < 1E-05)

Base call quality data from DBCLS SRA