Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CDK11A

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
HCT116
tissue
HCT116 cells
method
ChIP-seq CDK11
condition
CDK11_ChIP_36h
strain
HCT116 Flp-in
antibody
Abcam CDK11 (ab19393)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
19420567
Reads aligned (%)
90.5
Duplicates removed (%)
7.3
Number of peaks
802 (qval < 1E-05)

hg38

Number of total reads
19420567
Reads aligned (%)
92.3
Duplicates removed (%)
6.5
Number of peaks
577 (qval < 1E-05)

Base call quality data from DBCLS SRA