SRX4496679
GSM3316848: AML P3 Dx H3K27ac; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
Acute myeloid leukemia
NA
NA

Attributes by original data submitter

Sample

source_name
Peripheral Blood
time point
initial diagnosis
antibody
H3K27ac (ab4729)
tissue
Peripheral Blood
disease
acute myeloid leukemia

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
TruSeq DNA sample preparation kit (Illumina)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22302639
Reads aligned (%)
94.0
Duplicates removed (%)
8.3
Number of peaks
30057 (qval < 1E-05)

hg19

Number of total reads
22302639
Reads aligned (%)
93.7
Duplicates removed (%)
8.6
Number of peaks
29984 (qval < 1E-05)

Base call quality data from DBCLS SRA