Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Blood
Cell type
KOPT-K1
NA
NA

Attributes by original data submitter

Sample

source_name
KOPT-K1 persister cells
cell line
KOPT-K1
cell type
T-cell acute lymphoblastic leukemia
treated with
1uM gamma Secretase inhibitor over 7wks
chip antibody
H3K36me3
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
51318139
Reads aligned (%)
67.8
Duplicates removed (%)
4.3
Number of peaks
2292 (qval < 1E-05)

hg19

Number of total reads
51318139
Reads aligned (%)
67.6
Duplicates removed (%)
4.7
Number of peaks
2333 (qval < 1E-05)

Base call quality data from DBCLS SRA