Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Adult
Cell type
Young adult
NA
NA

Attributes by original data submitter

Sample

source_name
C. elegans young adults
developmental stage
young adult
Sex
hermaphrodite
food
E. coli OP50 strain
antibody used for chip
Pol II

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation was performed using the protocol described in BMC Genomics. 2014 Dec 22;15:1157. doi: 10.1186/1471-2164-15-1157. Standard Illumina library was constructed as described in BMC Genomics. 2014 Dec 22;15:1157. doi: 10.1186/1471-2164-15-1157. Standard Illumina library for genomic DNA

Sequencing Platform

instrument_model
Illumina HiSeq 2500

ce11

Number of total reads
8674234
Reads aligned (%)
81.9
Duplicates removed (%)
10.1
Number of peaks
3810 (qval < 1E-05)

ce10

Number of total reads
8674234
Reads aligned (%)
81.9
Duplicates removed (%)
10.1
Number of peaks
3818 (qval < 1E-05)

Base call quality data from DBCLS SRA